J4_8C3A_018

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C3A_018 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.0583

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C3A|1|AS|U|2982
8C3A|1|AS|A|2983
8C3A|1|AS|A|2984
*
8C3A|1|AS|U|3014
8C3A|1|AS|C|3015
*
8C3A|1|AS|G|3070
8C3A|1|AS|C|3071
8C3A|1|AS|U|3072
*
8C3A|1|AS|A|3106
8C3A|1|AS|U|3107
8C3A|1|AS|G|3108

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BJ

Ribosomal protein L13

Chain BQ

60S ribosomal protein L23-A