J4_8C3A_020
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8C3A|1|B|A|621, 8C3A|1|B|A|1011, 8C3A|1|B|C|1013, 8C3A|1|B|U|1014, 8C3A|1|B|A|1015, 8C3A|1|B|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8C3A_020 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.04
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8C3A|1|B|A|620
8C3A|1|B|A|621
8C3A|1|B|G|622
*
8C3A|1|B|C|960
8C3A|1|B|G|961
8C3A|1|B|A|962
8C3A|1|B|A|963
8C3A|1|B|A|964
8C3A|1|B|G|965
*
8C3A|1|B|C|1006
8C3A|1|B|C|1007
8C3A|1|B|A|1008
8C3A|1|B|U|1009
8C3A|1|B|A|1010
8C3A|1|B|A|1011
8C3A|1|B|A|1012
8C3A|1|B|C|1013
8C3A|1|B|U|1014
8C3A|1|B|A|1015
8C3A|1|B|U|1016
8C3A|1|B|G|1017
*
8C3A|1|B|U|1088
8C3A|1|B|U|1089
Current chains
- Chain B
- 18S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain AQ
- 60S ribosomal protein L43-A
- Chain N
- 40S ribosomal protein S11A
- Chain P
- 40S ribosomal protein S13
- Chain Q
- 40S ribosomal protein S14-A
- Chain Y
- 40S ribosomal protein S22-A
- Chain Z
- Ribosomal protein S23 (S12)
- Chain c
- 40S ribosomal protein S26
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