J4_8C94_001

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C94|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C94_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3843

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C94|1|A|C|268
8C94|1|A|C|269
*
8C94|1|A|G|370
8C94|1|A|A|371
8C94|1|A|G|372
8C94|1|A|U|373
8C94|1|A|A|374
8C94|1|A|G|375
*
8C94|1|A|U|399
8C94|1|A|G|400
8C94|1|A|A|401
8C94|1|A|A|402
8C94|1|A|U|403
8C94|1|A|A|404
8C94|1|A|U|405
8C94|1|A|G|406
*
8C94|1|A|C|421
8C94|1|A|A|422
8C94|1|A|A|423
8C94|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains