J4_8C96_006

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C96|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C96_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4648

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C96|1|A|C|268
8C96|1|A|C|269
*
8C96|1|A|G|370
8C96|1|A|A|371
8C96|1|A|G|372
8C96|1|A|U|373
8C96|1|A|A|374
8C96|1|A|G|375
*
8C96|1|A|U|399
8C96|1|A|G|400
8C96|1|A|A|401
8C96|1|A|A|402
8C96|1|A|U|403
8C96|1|A|A|404
8C96|1|A|U|405
8C96|1|A|G|406
*
8C96|1|A|C|421
8C96|1|A|A|422
8C96|1|A|A|423
8C96|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains