J4_8C97_001

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C97|1|A|A|371, 8C97|1|A|A|401, 8C97|1|A|A|402, 8C97|1|A|U|403, 8C97|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C97_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4747

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C97|1|A|C|268
8C97|1|A|C|269
*
8C97|1|A|G|370
8C97|1|A|A|371
8C97|1|A|G|372
8C97|1|A|U|373
8C97|1|A|A|374
8C97|1|A|G|375
*
8C97|1|A|U|399
8C97|1|A|G|400
8C97|1|A|A|401
8C97|1|A|A|402
8C97|1|A|U|403
8C97|1|A|A|404
8C97|1|A|U|405
8C97|1|A|G|406
*
8C97|1|A|C|421
8C97|1|A|A|422
8C97|1|A|A|423
8C97|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains