J4_8C9A_001

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C9A|1|A|U|403, 8C9A|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C9A_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3761

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C9A|1|A|C|268
8C9A|1|A|C|269
*
8C9A|1|A|G|370
8C9A|1|A|A|371
8C9A|1|A|G|372
8C9A|1|A|U|373
8C9A|1|A|A|374
8C9A|1|A|G|375
*
8C9A|1|A|U|399
8C9A|1|A|G|400
8C9A|1|A|A|401
8C9A|1|A|A|402
8C9A|1|A|U|403
8C9A|1|A|A|404
8C9A|1|A|U|405
8C9A|1|A|G|406
*
8C9A|1|A|C|421
8C9A|1|A|A|422
8C9A|1|A|A|423
8C9A|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains