J4_8C9A_002

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8C9A|1|A|G|1341, 8C9A|1|A|A|1342

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C9A_002 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.225

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C9A|1|A|U|1313
8C9A|1|A|C|1314
*
8C9A|1|A|G|1338
8C9A|1|A|G|1339
8C9A|1|A|U|1340
8C9A|1|A|G|1341
8C9A|1|A|A|1342
8C9A|1|A|G|1343
*
8C9A|1|A|C|1404
8C9A|1|A|U|1405
*
8C9A|1|A|A|1597
8C9A|1|A|A|1598
8C9A|1|A|U|1599
8C9A|1|A|C|1600
8C9A|1|A|G|1601
8C9A|1|A|U|1602
8C9A|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23