J4_8CAM_001

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8CAM|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CAM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0987

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8CAM|1|a|C|268
8CAM|1|a|C|269
*
8CAM|1|a|G|370
8CAM|1|a|A|371
8CAM|1|a|G|372
8CAM|1|a|U|373
8CAM|1|a|A|374
8CAM|1|a|G|375
*
8CAM|1|a|U|399
8CAM|1|a|G|400
8CAM|1|a|A|401
8CAM|1|a|A|402
8CAM|1|a|U|403
8CAM|1|a|A|404
8CAM|1|a|U|405
8CAM|1|a|G|406
*
8CAM|1|a|C|421
8CAM|1|a|A|422
8CAM|1|a|A|423
8CAM|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28