J4_8CAM_004

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8CAM|1|a|G|1271, 8CAM|1|a|A|1272, 8CAM|1|a|U|1273, 8CAM|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CAM_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0518

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8CAM|1|a|C|1270
8CAM|1|a|G|1271
8CAM|1|a|A|1272
8CAM|1|a|U|1273
8CAM|1|a|A|1274
8CAM|1|a|A|1275
8CAM|1|a|A|1276
*
8CAM|1|a|U|1294
8CAM|1|a|C|1295
*
8CAM|1|a|G|1645
8CAM|1|a|C|1646
8CAM|1|a|U|1647
8CAM|1|a|U|1648
*
8CAM|1|a|A|2009
8CAM|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32