J4_8CBJ_001
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8CBJ|1|2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CBJ_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1247
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CBJ|1|2|C|99
8CBJ|1|2|A|100
8CBJ|1|2|U|101
8CBJ|1|2|U|102
8CBJ|1|2|A|103
8CBJ|1|2|A|104
8CBJ|1|2|A|105
8CBJ|1|2|U|106
8CBJ|1|2|C|107
*
8CBJ|1|2|G|307
8CBJ|1|2|C|308
8CBJ|1|2|C|309
*
8CBJ|1|2|G|357
8CBJ|1|2|U|358
8CBJ|1|2|A|359
8CBJ|1|2|A|360
8CBJ|1|2|C|361
*
8CBJ|1|2|G|383
8CBJ|1|2|G|384
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-B
- Chain I
- 40S ribosomal protein S8-A
- Chain L
- 40S ribosomal protein S11-A
- Chain X
- 40S ribosomal protein S23-A
- Chain k
- TSR1 isoform 1
Coloring options: