J4_8CGK_008

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGK_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0316

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CGK|1|a|A|1772
8CGK|1|a|A|1773
8CGK|1|a|C|1774
8CGK|1|a|U|1775
8CGK|1|a|G|1776
*
8CGK|1|a|C|1788
8CGK|1|a|A|1789
8CGK|1|a|C|1790
8CGK|1|a|A|1791
8CGK|1|a|G|1792
*
8CGK|1|a|U|1827
8CGK|1|a|G|1828
8CGK|1|a|A|1829
8CGK|1|a|C|1830
*
8CGK|1|a|G|1975
8CGK|1|a|U|1976
8CGK|1|a|A|1977
8CGK|1|a|A|1978
8CGK|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2