J4_8CGK_010

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8CGK|1|a|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGK_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.0403

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|C|2285
8CGK|1|a|G|2286
8CGK|1|a|A|2287
8CGK|1|a|A|2288
8CGK|1|a|G|2289
*
8CGK|1|a|U|2343
8CGK|1|a|U|2344
8CGK|1|a|G|2345
8CGK|1|a|A|2346
8CGK|1|a|C|2347
*
8CGK|1|a|G|2370
8CGK|1|a|G|2371
8CGK|1|a|U|2372
*
8CGK|1|a|A|2381
8CGK|1|a|G|2382
8CGK|1|a|G|2383

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain v

Large ribosomal subunit protein bL27