J4_8CIV_009

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CIV_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0679

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CIV|1|AA|U|3010
8CIV|1|AA|A|3011
8CIV|1|AA|A|3012
*
8CIV|1|AA|U|3042
8CIV|1|AA|C|3043
*
8CIV|1|AA|G|3098
8CIV|1|AA|C|3099
8CIV|1|AA|U|3100
*
8CIV|1|AA|A|3134
8CIV|1|AA|U|3135
8CIV|1|AA|G|3136

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A