J4_8CMJ_003

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

8CMJ|1|AA|A|1452, 8CMJ|1|AA|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CMJ_003 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.1402

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_87855.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|C|1451
8CMJ|1|AA|A|1452
8CMJ|1|AA|A|1453
8CMJ|1|AA|A|1454
8CMJ|1|AA|U|1455
8CMJ|1|AA|A|1456
8CMJ|1|AA|U|1457
*
8CMJ|1|AA|A|1475
8CMJ|1|AA|G|1476
*
8CMJ|1|AA|U|1877
8CMJ|1|AA|G|1878
8CMJ|1|AA|A|1879
8CMJ|1|AA|U|1880
*
8CMJ|1|AA|A|2352
8CMJ|1|AA|G|2353

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain D

60S ribosomal protein L19-A

Chain P

60S ribosomal protein L31-A