J4_8CMJ_004
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8CMJ|1|AA|U|1523, 8CMJ|1|AA|A|1524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CMJ_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.1154
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CMJ|1|AA|G|1492
8CMJ|1|AA|G|1493
8CMJ|1|AA|U|1494
8CMJ|1|AA|U|1495
8CMJ|1|AA|C|1496
*
8CMJ|1|AA|G|1520
8CMJ|1|AA|G|1521
8CMJ|1|AA|U|1522
8CMJ|1|AA|U|1523
8CMJ|1|AA|A|1524
8CMJ|1|AA|G|1525
*
8CMJ|1|AA|C|1614
8CMJ|1|AA|C|1615
*
8CMJ|1|AA|G|1829
8CMJ|1|AA|G|1830
8CMJ|1|AA|U|1831
8CMJ|1|AA|C|1832
8CMJ|1|AA|G|1833
8CMJ|1|AA|U|1834
8CMJ|1|AA|A|1835
8CMJ|1|AA|C|1836
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L19-A
- Chain J
- 60S ribosomal protein L25
- Chain S
- 60S ribosomal protein L34-A
- Chain V
- 60S ribosomal protein L37-A
- Chain W
- 60S ribosomal protein L38
- Chain X
- 60S ribosomal protein L39
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