J4_8CRX_013
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8CRX|1|a|U|2154
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CRX_013 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0839
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
8CRX|1|a|C|2016
8CRX|1|a|U|2017
8CRX|1|a|2MG|2018
*
8CRX|1|a|C|2088
8CRX|1|a|G|2089
*
8CRX|1|a|C|2107
8CRX|1|a|C|2108
8CRX|1|a|U|2109
8CRX|1|a|A|2110
8CRX|1|a|A|2111
8CRX|1|a|G|2112
8CRX|1|a|G|2113
8CRX|1|a|U|2114
8CRX|1|a|A|2115
8CRX|1|a|G|2116
*
8CRX|1|a|C|2150
8CRX|1|a|G|2151
8CRX|1|a|A|2152
8CRX|1|a|A|2153
8CRX|1|a|U|2154
8CRX|1|a|G|2155
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- Transfer RNA; tRNA
- Chain X
- 30S ribosomal protein bS22
- Chain c
- 50S ribosomal protein L2
Coloring options: