J4_8CVJ_005

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

8CVJ|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVJ_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0792

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CVJ|1|1A|U|1313
8CVJ|1|1A|C|1314
*
8CVJ|1|1A|G|1338
8CVJ|1|1A|G|1339
8CVJ|1|1A|U|1340
8CVJ|1|1A|U|1341
8CVJ|1|1A|A|1342
8CVJ|1|1A|G|1343
*
8CVJ|1|1A|C|1404
8CVJ|1|1A|U|1405
*
8CVJ|1|1A|A|1597
8CVJ|1|1A|C|1598
8CVJ|1|1A|C|1599
8CVJ|1|1A|C|1600
8CVJ|1|1A|G|1601
8CVJ|1|1A|U|1602
8CVJ|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23