J4_8CVJ_007

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVJ_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0508

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CVJ|1|1A|G|1772
8CVJ|1|1A|A|1773
8CVJ|1|1A|C|1774
8CVJ|1|1A|U|1775
8CVJ|1|1A|G|1776
*
8CVJ|1|1A|C|1788
8CVJ|1|1A|A|1789
8CVJ|1|1A|C|1790
8CVJ|1|1A|A|1791
8CVJ|1|1A|G|1792
*
8CVJ|1|1A|C|1827
8CVJ|1|1A|G|1828
8CVJ|1|1A|A|1829
8CVJ|1|1A|C|1830
*
8CVJ|1|1A|G|1975
8CVJ|1|1A|U|1976
8CVJ|1|1A|A|1977
8CVJ|1|1A|A|1978
8CVJ|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA