J4_8CVJ_012

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8CVJ|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVJ_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1088

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8CVJ|1|1a|G|142
8CVJ|1|1a|A|143
8CVJ|1|1a|G|144
*
8CVJ|1|1a|C|178
8CVJ|1|1a|A|179
8CVJ|1|1a|U|180
8CVJ|1|1a|G|181
8CVJ|1|1a|U|182
8CVJ|1|1a|G|183
*
8CVJ|1|1a|C|194
8CVJ|1|1a|A|195
8CVJ|1|1a|A|196
8CVJ|1|1a|A|197
8CVJ|1|1a|G|198
*
8CVJ|1|1a|C|219
8CVJ|1|1a|G|220
8CVJ|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20