J4_8CVK_012

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8CVK|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVK_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1208

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8CVK|1|1a|G|142
8CVK|1|1a|A|143
8CVK|1|1a|G|144
*
8CVK|1|1a|C|178
8CVK|1|1a|A|179
8CVK|1|1a|U|180
8CVK|1|1a|G|181
8CVK|1|1a|U|182
8CVK|1|1a|G|183
*
8CVK|1|1a|C|194
8CVK|1|1a|A|195
8CVK|1|1a|A|196
8CVK|1|1a|A|197
8CVK|1|1a|G|198
*
8CVK|1|1a|C|219
8CVK|1|1a|G|220
8CVK|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20