J4_8CVL_025

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8CVL|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVL_025 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8CVL|1|2A|C|2285
8CVL|1|2A|A|2286
8CVL|1|2A|A|2287
8CVL|1|2A|A|2288
8CVL|1|2A|G|2289
*
8CVL|1|2A|C|2343
8CVL|1|2A|U|2344
8CVL|1|2A|G|2345
8CVL|1|2A|A|2346
8CVL|1|2A|C|2347
*
8CVL|1|2A|G|2370
8CVL|1|2A|G|2371
8CVL|1|2A|G|2372
*
8CVL|1|2A|C|2381
8CVL|1|2A|G|2382
8CVL|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18