J4_8CVM_004

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUGAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|C|685
8CVM|1|a|G|686
8CVM|1|a|A|687
8CVM|1|a|G|688
*
8CVM|1|a|C|710
8CVM|1|a|G|711
8CVM|1|a|U|712
8CVM|1|a|A|713
8CVM|1|a|G|714
*
8CVM|1|a|C|721
8CVM|1|a|G|722
8CVM|1|a|A|723
8CVM|1|a|G|724
*
8CVM|1|a|C|736
8CVM|1|a|G|737
8CVM|1|a|U|738
8CVM|1|a|G|739
8CVM|1|a|A|740
8CVM|1|a|G|741

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15