J4_8CVM_006

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8CVM|1|a|G|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVM_006 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0972

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|G|1386
8CVM|1|a|G|1387
8CVM|1|a|U|1388
8CVM|1|a|U|1389
8CVM|1|a|C|1390
*
8CVM|1|a|G|1414
8CVM|1|a|G|1415
8CVM|1|a|U|1416
8CVM|1|a|G|1417
8CVM|1|a|A|1418
8CVM|1|a|G|1419
*
8CVM|1|a|C|1480
8CVM|1|a|C|1481
*
8CVM|1|a|G|1781
8CVM|1|a|C|1782
8CVM|1|a|C|1783
8CVM|1|a|C|1784
8CVM|1|a|G|1785
8CVM|1|a|U|1786
8CVM|1|a|A|1787
8CVM|1|a|C|1788

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23