J4_8CVM_012

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGC*GAC*GGUUG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVM_012 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1655

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|G|2825
8CVM|1|a|G|2826
8CVM|1|a|G|2827
8CVM|1|a|C|2828
*
8CVM|1|a|G|2856
8CVM|1|a|A|2857
8CVM|1|a|C|2858
*
8CVM|1|a|G|2913
8CVM|1|a|G|2914
8CVM|1|a|U|2915
8CVM|1|a|U|2916
8CVM|1|a|G|2917
*
8CVM|1|a|C|2951
8CVM|1|a|G|2952
8CVM|1|a|C|2953

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14