J4_8CWO_003
3D structure
- PDB id
- 8CWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GGG*CGAAAG*CUGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8CWO|1|A|G|558, 8CWO|1|A|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CWO_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0711
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8CWO|1|A|G|557
8CWO|1|A|G|558
8CWO|1|A|G|559
*
8CWO|1|A|C|746
8CWO|1|A|G|747
8CWO|1|A|A|748
8CWO|1|A|A|749
8CWO|1|A|A|750
8CWO|1|A|G|751
*
8CWO|1|A|C|792
8CWO|1|A|U|793
8CWO|1|A|G|794
8CWO|1|A|U|795
8CWO|1|A|A|796
8CWO|1|A|A|797
8CWO|1|A|A|798
8CWO|1|A|C|799
8CWO|1|A|G|800
8CWO|1|A|G|801
8CWO|1|A|U|802
8CWO|1|A|G|803
*
8CWO|1|A|C|863
8CWO|1|A|C|864
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain X
- 30S ribosomal protein bS22
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