J4_8E30_010

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8E30|1|I|A|2288, 8E30|1|I|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E30_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1015

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8E30|1|I|C|2285
8E30|1|I|G|2286
8E30|1|I|A|2287
8E30|1|I|A|2288
8E30|1|I|G|2289
*
8E30|1|I|U|2343
8E30|1|I|U|2344
8E30|1|I|G|2345
8E30|1|I|A|2346
8E30|1|I|C|2347
*
8E30|1|I|G|2370
8E30|1|I|G|2371
8E30|1|I|U|2372
*
8E30|1|I|A|2381
8E30|1|I|G|2382
8E30|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains