J4_8E32_010

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8E32|1|I|A|2288, 8E32|1|I|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E32_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1368

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8E32|1|I|C|2285
8E32|1|I|G|2286
8E32|1|I|A|2287
8E32|1|I|A|2288
8E32|1|I|G|2289
*
8E32|1|I|U|2343
8E32|1|I|U|2344
8E32|1|I|G|2345
8E32|1|I|A|2346
8E32|1|I|C|2347
*
8E32|1|I|G|2370
8E32|1|I|G|2371
8E32|1|I|U|2372
*
8E32|1|I|A|2381
8E32|1|I|G|2382
8E32|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains