J4_8E36_010

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8E36|1|I|A|2288, 8E36|1|I|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E36_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1083

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8E36|1|I|C|2285
8E36|1|I|G|2286
8E36|1|I|A|2287
8E36|1|I|A|2288
8E36|1|I|G|2289
*
8E36|1|I|U|2343
8E36|1|I|U|2344
8E36|1|I|G|2345
8E36|1|I|A|2346
8E36|1|I|C|2347
*
8E36|1|I|G|2370
8E36|1|I|G|2371
8E36|1|I|U|2372
*
8E36|1|I|A|2381
8E36|1|I|G|2382
8E36|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains