J4_8EKB_026

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EKB_026 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1019

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8EKB|1|2a|G|142
8EKB|1|2a|A|143
8EKB|1|2a|G|144
*
8EKB|1|2a|C|178
8EKB|1|2a|A|179
8EKB|1|2a|U|180
8EKB|1|2a|G|181
8EKB|1|2a|U|182
8EKB|1|2a|G|183
*
8EKB|1|2a|C|194
8EKB|1|2a|A|195
8EKB|1|2a|A|196
8EKB|1|2a|A|197
8EKB|1|2a|G|198
*
8EKB|1|2a|C|219
8EKB|1|2a|G|220
8EKB|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20