J4_8EVP_001
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8EVP|1|A1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EVP_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0894
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8EVP|1|A1|U|112
8EVP|1|A1|C|113
*
8EVP|1|A1|G|267
8EVP|1|A1|A|268
8EVP|1|A1|G|269
8EVP|1|A1|U|270
8EVP|1|A1|C|271
8EVP|1|A1|G|272
*
8EVP|1|A1|C|293
8EVP|1|A1|U|294
8EVP|1|A1|A|295
8EVP|1|A1|A|296
8EVP|1|A1|G|297
8EVP|1|A1|U|298
8EVP|1|A1|G|299
*
8EVP|1|A1|U|316
8EVP|1|A1|A|317
8EVP|1|A1|A|318
8EVP|1|A1|A|319
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
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