J4_8EVP_011
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8EVP|1|B5|A|623, 8EVP|1|B5|A|1025, 8EVP|1|B5|C|1027, 8EVP|1|B5|U|1028, 8EVP|1|B5|A|1029, 8EVP|1|B5|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EVP_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0624
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EVP|1|B5|A|622
8EVP|1|B5|A|623
8EVP|1|B5|G|624
*
8EVP|1|B5|C|974
8EVP|1|B5|G|975
8EVP|1|B5|A|976
8EVP|1|B5|A|977
8EVP|1|B5|A|978
8EVP|1|B5|G|979
*
8EVP|1|B5|C|1020
8EVP|1|B5|C|1021
8EVP|1|B5|A|1022
8EVP|1|B5|U|1023
8EVP|1|B5|A|1024
8EVP|1|B5|A|1025
8EVP|1|B5|A|1026
8EVP|1|B5|C|1027
8EVP|1|B5|U|1028
8EVP|1|B5|A|1029
8EVP|1|B5|U|1030
8EVP|1|B5|G|1031
*
8EVP|1|B5|U|1102
8EVP|1|B5|U|1103
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- RPS26B isoform 1
Coloring options: