J4_8FC2_022

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8FC2|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC2_022 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.0676

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8FC2|1|2A|C|2285
8FC2|1|2A|A|2286
8FC2|1|2A|A|2287
8FC2|1|2A|A|2288
8FC2|1|2A|G|2289
*
8FC2|1|2A|C|2343
8FC2|1|2A|U|2344
8FC2|1|2A|G|2345
8FC2|1|2A|A|2346
8FC2|1|2A|C|2347
*
8FC2|1|2A|G|2370
8FC2|1|2A|G|2371
8FC2|1|2A|G|2372
*
8FC2|1|2A|C|2381
8FC2|1|2A|G|2382
8FC2|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18