J4_8FC4_014

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8FC4|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC4_014 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0659

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8FC4|1|2A|C|268
8FC4|1|2A|U|269
*
8FC4|1|2A|G|370
8FC4|1|2A|A|371
8FC4|1|2A|G|372
8FC4|1|2A|U|373
8FC4|1|2A|A|374
8FC4|1|2A|C|375
*
8FC4|1|2A|G|399
8FC4|1|2A|G|400
8FC4|1|2A|A|401
8FC4|1|2A|A|402
8FC4|1|2A|U|403
8FC4|1|2A|C|404
8FC4|1|2A|U|405
8FC4|1|2A|G|406
*
8FC4|1|2A|U|421
8FC4|1|2A|A|422
8FC4|1|2A|A|423
8FC4|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9