J4_8FC4_022

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8FC4|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC4_022 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.0679

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

8FC4|1|2A|C|2285
8FC4|1|2A|A|2286
8FC4|1|2A|A|2287
8FC4|1|2A|A|2288
8FC4|1|2A|G|2289
*
8FC4|1|2A|C|2343
8FC4|1|2A|U|2344
8FC4|1|2A|G|2345
8FC4|1|2A|A|2346
8FC4|1|2A|C|2347
*
8FC4|1|2A|G|2370
8FC4|1|2A|G|2371
8FC4|1|2A|G|2372
*
8FC4|1|2A|C|2381
8FC4|1|2A|G|2382
8FC4|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18