J4_8FC5_012

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC5_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1041

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8FC5|1|1a|G|142
8FC5|1|1a|A|143
8FC5|1|1a|G|144
*
8FC5|1|1a|C|178
8FC5|1|1a|A|179
8FC5|1|1a|U|180
8FC5|1|1a|G|181
8FC5|1|1a|U|182
8FC5|1|1a|G|183
*
8FC5|1|1a|C|194
8FC5|1|1a|A|195
8FC5|1|1a|A|196
8FC5|1|1a|A|197
8FC5|1|1a|G|198
*
8FC5|1|1a|C|219
8FC5|1|1a|G|220
8FC5|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20