J4_8FC6_012

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC6_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0886

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8FC6|1|1a|G|142
8FC6|1|1a|A|143
8FC6|1|1a|G|144
*
8FC6|1|1a|C|178
8FC6|1|1a|A|179
8FC6|1|1a|U|180
8FC6|1|1a|G|181
8FC6|1|1a|U|182
8FC6|1|1a|G|183
*
8FC6|1|1a|C|194
8FC6|1|1a|A|195
8FC6|1|1a|A|196
8FC6|1|1a|A|197
8FC6|1|1a|G|198
*
8FC6|1|1a|C|219
8FC6|1|1a|G|220
8FC6|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20