J4_8FKP_001
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8FKP|1|L3|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FKP_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1631
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8FKP|1|L3|C|111
8FKP|1|L3|C|112
*
8FKP|1|L3|G|278
8FKP|1|L3|A|279
8FKP|1|L3|G|280
8FKP|1|L3|U|281
8FKP|1|L3|C|282
8FKP|1|L3|G|283
*
8FKP|1|L3|C|304
8FKP|1|L3|A|305
8FKP|1|L3|A|306
8FKP|1|L3|A|307
8FKP|1|L3|G|308
8FKP|1|L3|C|309
8FKP|1|L3|G|310
*
8FKP|1|L3|U|327
8FKP|1|L3|A|328
8FKP|1|L3|A|329
8FKP|1|L3|G|330
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LS
- 60S ribosomal protein L35
- Chain LU
- 60S ribosomal protein L36
- Chain SJ
- pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3
- Chain SO
- Ribosome biogenesis protein BRX1 homolog
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