J4_8FKZ_001
3D structure
- PDB id
- 8FKZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8FKZ|1|L3|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FKZ_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1453
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8FKZ|1|L3|C|111
8FKZ|1|L3|C|112
*
8FKZ|1|L3|G|278
8FKZ|1|L3|A|279
8FKZ|1|L3|G|280
8FKZ|1|L3|U|281
8FKZ|1|L3|C|282
8FKZ|1|L3|G|283
*
8FKZ|1|L3|C|304
8FKZ|1|L3|A|305
8FKZ|1|L3|A|306
8FKZ|1|L3|A|307
8FKZ|1|L3|G|308
8FKZ|1|L3|C|309
8FKZ|1|L3|G|310
*
8FKZ|1|L3|U|327
8FKZ|1|L3|A|328
8FKZ|1|L3|A|329
8FKZ|1|L3|G|330
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LS
- 60S ribosomal protein L35
- Chain LU
- 60S ribosomal protein L36
Coloring options: