J4_8FL9_010

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8FL9|1|L3|A|2366, 8FL9|1|L3|U|2369, 8FL9|1|L3|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL9|1|L3|OMC|2365
8FL9|1|L3|A|2366
8FL9|1|L3|A|2367
8FL9|1|L3|A|2368
8FL9|1|L3|U|2369
8FL9|1|L3|A|2370
8FL9|1|L3|U|2371
*
8FL9|1|L3|A|2389
8FL9|1|L3|G|2390
8FL9|1|L3|G|2391
*
8FL9|1|L3|OMC|2824
8FL9|1|L3|A|2825
8FL9|1|L3|U|2826
8FL9|1|L3|G|2827
8FL9|1|L3|U|2828
8FL9|1|L3|U|2829
*
8FL9|1|L3|A|3856
8FL9|1|L3|G|3857

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LD

60S ribosomal protein L19

Chain LP

60S ribosomal protein L31

Chain NP

Zinc finger protein 593

Chain SR

GTP-binding protein 4