J4_8FOM_016

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8FOM|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FOM_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1598

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8FOM|1|XA|G|142
8FOM|1|XA|A|143
8FOM|1|XA|G|144
*
8FOM|1|XA|C|178
8FOM|1|XA|A|179
8FOM|1|XA|U|180
8FOM|1|XA|G|181
8FOM|1|XA|U|182
8FOM|1|XA|G|183
*
8FOM|1|XA|C|194
8FOM|1|XA|A|195
8FOM|1|XA|A|196
8FOM|1|XA|A|197
8FOM|1|XA|G|198
*
8FOM|1|XA|C|219
8FOM|1|XA|G|220
8FOM|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20