J4_8FRU_006
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GACUG*CACAG*UGAUU*ACCAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FRU_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0908
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FRU|1|1|G|1617
8FRU|1|1|A|1618
8FRU|1|1|C|1619
8FRU|1|1|U|1620
8FRU|1|1|G|1621
*
8FRU|1|1|C|1633
8FRU|1|1|A|1634
8FRU|1|1|C|1635
8FRU|1|1|A|1636
8FRU|1|1|G|1637
*
8FRU|1|1|U|1672
8FRU|1|1|G|1673
8FRU|1|1|A|1674
8FRU|1|1|U|1675
8FRU|1|1|U|1676
*
8FRU|1|1|A|1803
8FRU|1|1|C|1804
8FRU|1|1|C|1805
8FRU|1|1|A|1806
8FRU|1|1|A|1807
8FRU|1|1|C|1808
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain n
- 60S ribosomal protein eL41
- Chain p
- 60S ribosomal protein eL43
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