J4_8FZD_010

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8FZD|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZD_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.0974

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|C|2285
8FZD|1|A|G|2286
8FZD|1|A|A|2287
8FZD|1|A|A|2288
8FZD|1|A|G|2289
*
8FZD|1|A|U|2343
8FZD|1|A|U|2344
8FZD|1|A|G|2345
8FZD|1|A|A|2346
8FZD|1|A|C|2347
*
8FZD|1|A|G|2370
8FZD|1|A|G|2371
8FZD|1|A|U|2372
*
8FZD|1|A|A|2381
8FZD|1|A|G|2382
8FZD|1|A|G|2383

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain Q

50S ribosomal protein L18

Chain Y

50S ribosomal protein L27