J4_8FZF_008

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0833

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8FZF|1|A|A|1772
8FZF|1|A|A|1773
8FZF|1|A|C|1774
8FZF|1|A|U|1775
8FZF|1|A|G|1776
*
8FZF|1|A|C|1788
8FZF|1|A|A|1789
8FZF|1|A|C|1790
8FZF|1|A|A|1791
8FZF|1|A|G|1792
*
8FZF|1|A|U|1827
8FZF|1|A|G|1828
8FZF|1|A|A|1829
8FZF|1|A|C|1830
*
8FZF|1|A|G|1975
8FZF|1|A|U|1976
8FZF|1|A|A|1977
8FZF|1|A|A|1978
8FZF|1|A|U|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2