J4_8FZJ_010
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 8FZJ|1|A|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FZJ_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0848
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FZJ|1|A|C|2285
8FZJ|1|A|G|2286
8FZJ|1|A|A|2287
8FZJ|1|A|A|2288
8FZJ|1|A|G|2289
*
8FZJ|1|A|U|2343
8FZJ|1|A|U|2344
8FZJ|1|A|G|2345
8FZJ|1|A|A|2346
8FZJ|1|A|C|2347
*
8FZJ|1|A|G|2370
8FZJ|1|A|G|2371
8FZJ|1|A|U|2372
*
8FZJ|1|A|A|2381
8FZJ|1|A|G|2382
8FZJ|1|A|G|2383
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain Q
- 50S ribosomal protein L18
- Chain Y
- 50S ribosomal protein L27
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