J4_8G2B_021

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

8G2B|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2B_021 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0603

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G2B|1|2A|U|1313
8G2B|1|2A|C|1314
*
8G2B|1|2A|G|1338
8G2B|1|2A|G|1339
8G2B|1|2A|U|1340
8G2B|1|2A|U|1341
8G2B|1|2A|A|1342
8G2B|1|2A|G|1343
*
8G2B|1|2A|C|1404
8G2B|1|2A|U|1405
*
8G2B|1|2A|A|1597
8G2B|1|2A|C|1598
8G2B|1|2A|C|1599
8G2B|1|2A|C|1600
8G2B|1|2A|G|1601
8G2B|1|2A|U|1602
8G2B|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23