J4_8G2D_028

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8G2D|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2D_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1073

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8G2D|1|2a|G|142
8G2D|1|2a|A|143
8G2D|1|2a|G|144
*
8G2D|1|2a|C|178
8G2D|1|2a|A|179
8G2D|1|2a|U|180
8G2D|1|2a|G|181
8G2D|1|2a|U|182
8G2D|1|2a|G|183
*
8G2D|1|2a|C|194
8G2D|1|2a|A|195
8G2D|1|2a|A|196
8G2D|1|2a|A|197
8G2D|1|2a|G|198
*
8G2D|1|2a|C|219
8G2D|1|2a|G|220
8G2D|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20