J4_8G2U_001

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G2U|1|B|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2U_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1305

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G2U|1|B|C|268
8G2U|1|B|C|269
*
8G2U|1|B|G|370
8G2U|1|B|A|371
8G2U|1|B|G|372
8G2U|1|B|U|373
8G2U|1|B|A|374
8G2U|1|B|G|375
*
8G2U|1|B|U|399
8G2U|1|B|G|400
8G2U|1|B|A|401
8G2U|1|B|A|402
8G2U|1|B|U|403
8G2U|1|B|A|404
8G2U|1|B|U|405
8G2U|1|B|G|406
*
8G2U|1|B|C|421
8G2U|1|B|A|422
8G2U|1|B|A|423
8G2U|1|B|G|424

Current chains

Chain B

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28