J4_8G31_001

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G31|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G31_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1795

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G31|1|B|C|268
8G31|1|B|C|269
*
8G31|1|B|G|370
8G31|1|B|A|371
8G31|1|B|G|372
8G31|1|B|U|373
8G31|1|B|A|374
8G31|1|B|G|375
*
8G31|1|B|U|399
8G31|1|B|G|400
8G31|1|B|A|401
8G31|1|B|A|402
8G31|1|B|U|403
8G31|1|B|A|404
8G31|1|B|U|405
8G31|1|B|G|406
*
8G31|1|B|C|421
8G31|1|B|A|422
8G31|1|B|A|423
8G31|1|B|G|424

Current chains

Chain B

23S

Nearby chains

Chain X

50S ribosomal protein L28