J4_8G31_004

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8G31|1|B|G|1271, 8G31|1|B|A|1272, 8G31|1|B|U|1273, 8G31|1|B|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G31_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1176

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8G31|1|B|C|1270
8G31|1|B|G|1271
8G31|1|B|A|1272
8G31|1|B|U|1273
8G31|1|B|A|1274
8G31|1|B|A|1275
8G31|1|B|A|1276
*
8G31|1|B|U|1294
8G31|1|B|C|1295
*
8G31|1|B|G|1645
8G31|1|B|C|1646
8G31|1|B|U|1647
8G31|1|B|U|1648
*
8G31|1|B|A|2009
8G31|1|B|G|2010

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22