J4_8G31_013

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8G31|1|v|C|183, 8G31|1|v|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G31_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1071

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G31|1|v|G|142
8G31|1|v|A|143
8G31|1|v|G|144
*
8G31|1|v|C|178
8G31|1|v|A|179
8G31|1|v|U|180
8G31|1|v|A|181
8G31|1|v|A|182
8G31|1|v|C|183
8G31|1|v|G|184
*
8G31|1|v|C|193
8G31|1|v|C|194
8G31|1|v|A|195
8G31|1|v|A|196
8G31|1|v|A|197
8G31|1|v|G|198
*
8G31|1|v|U|219
8G31|1|v|G|220
8G31|1|v|C|221

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20